miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|63103339|gb|DN956303.1|DN956303 CTGAAGTTGTGAACGGATCATGTCTAGCGATTCTGCTGATTACAACAGCTCAAGAGATAGAGACCATGGGGGGCCAGAAG
GAATGGAGCCTGATGGTATCATCGAGAGCAACTGGAATGAGATCACAGACAATTTTGATGATATGAACCTGAAGGAGTCT
CTTCTCAGGGGAATATACGCTTATGGTTTTGAAAAGCCGTCTGCCATTCAGCAGAGGGCCATCATCCCGTGCATCAAAGG
CTACGATGTCATTGCCCAAGCCCAGTCAGGAACTGGCAAGACAGCCACGTTTGCCATCTCTATCTTGCAGCAGCTGGACA
TTGAGCAGAAGGAGACTCAGGCTCTGGTTTTGGCTCCTACCAGAGAGCTGGCTCAGCAGATCCAGAAGGTCATTCTGGCT
CTTGGTGACTACATGGGGGCAACCTGCCATGCTTGCATCGGGGGTACCAACCTCCGCAGTGAGATTCAGAAGCTCCAGGC
CGAGGCTCCTCACATAGTGGTGGGCACGCCGGGCCGCGTGTACGACATGCTGAACAGGAGACATCTGTCTCCAAAATGGA
TCAAGATGTTTGTTCTTGATGAAGCCGATGAGATGTTGAGTCGGGGAATTTAGGATCAGATCTATGAGATCTTCCAGAAG
CTGAGCACAAACATTCAGGTGGTCTTGCTC




Most similar to sp|Q8JFP1|IF4A2_CHICK

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q8JFP1|IF4A2_CHICK Eukaryotic initiation factor 4A-II OS=Gallus
           gallus GN=EIF4A2 PE=2 SV=1
          Length = 407

 Score =  394 bits (1012), Expect = e-109
 Identities = 198/217 (91%), Positives = 207/217 (95%)
 Frame = +2

Query: 20  MSSDSADYNSSRDRDHGGPEGMEPDGIIESNWNEITDNFDDMNLKESLLRGIYAYGFEKP 199
           MS  SADY+    RDHGGPEGMEPDG+IESNWNEI DNFDDMNLKESLLRGIYAYGFEKP
Sbjct: 1   MSGGSADYS----RDHGGPEGMEPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKP 56

Query: 200 SAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLDIEQKETQALVLAPTRELAQQ 379
           SAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQL+I+ KETQALVLAPTRELAQQ
Sbjct: 57  SAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQ 116

Query: 380 IQKVILALGDYMGATCHACIGGTNLRSEIQKLQAEAPHIVVGTPGRVYDMLNRRHLSPKW 559
           IQKVILALGDYMGATCHACIGGTN+R+E+QKLQAEAPHIVVGTPGRV+DMLNRR+LSPKW
Sbjct: 117 IQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 176

Query: 560 IKMFVLDEADEMLSRGI*DQIYEIFQKLSTNIQVVLL 670
           IKMFVLDEADEMLSRG  DQIYEIFQKLSTNIQVVLL
Sbjct: 177 IKMFVLDEADEMLSRGFKDQIYEIFQKLSTNIQVVLL 213